Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0781549.3b with 62 members (chondroitin polymerizing factor)

Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda / Mandibulata /

... /

Pancrustacea / Hexapoda /

Neoptera /

Completeness score: 0.93

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

50.9%

This HOG has 166 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0322577	Viridiplantae	692		74.9%	1
HOG:E0790238	Metazoa	609		97.4%	1
HOG:E0782145	Eumetazoa	515		97.9%	1
HOG:E0789781	Metazoa	452		87.4%	1
HOG:E0319658	Streptophyta	367		98.1%	1
HOG:E0761420	Bilateria	366		13.7%	1
HOG:E0789668	Metazoa	325		53.2%	1
HOG:E0790029	Metazoa	298		2.3%	1
HOG:E0746362	Gnathostomata	294		1.4%	1
HOG:E0317837	Streptophytina	213		1.9%	1
HOG:E0519257	Gastropoda	205		10.7%	1
HOG:E0770799	Bilateria	183		91.3%	1
HOG:E0746557	Gnathostomata	154		37.7%	1
HOG:E0317964	Streptophytina	144		37.5%	1
HOG:E0746683	Gnathostomata	143		49.7%	1
HOG:E0760417	Deuterostomia	142		16.9%	1
HOG:E0746587	Gnathostomata	136		43.4%	1
HOG:E0752629	Vertebrata	124		4.0%	1
HOG:E0307881	Euphyllophyta	112		2.7%	1
HOG:E0777899	Eumetazoa	109		9.2%	1
HOG:E0279117	Mesangiospermae	104		88.5%	1
HOG:E0749006	Gnathostomata	100		89.0%	1
HOG:E0468324	leotiomyceta	99		65.7%	1
HOG:E0649688	Ecdysozoa	98		13.3%	1
HOG:E0315004	Embryophyta	95		96.8%	1

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